Changes

From Genome Analysis Wiki
Jump to: navigation, search

Minimac: 1000 Genomes Imputation Cookbook

311 bytes added, 18:11, 6 August 2012
3. Impute pseudo-autosomal part by sex
Impute females and males separately
 
minimac --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps females.hap --snps females.snps
minimac --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps males.hap --snps males.snps
== Imputation quality evaluation ==
369
edits

Navigation menu