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Revision as of 18:47, 27 August 2012
, 18:47, 27 August 2012→Reference Haplotypes
[ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz GIANT.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz]
[ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz GIANT.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz]
Furthermore, we provide also a [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002793 Metabochip] specific reference panel [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.metabo.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz GIANT.metabo.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz]. This panel saves a lot of time, since it focuses on the well-imputable fine-mapping regions.
Furthermore, we provide also a [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002793 Metabochip] specific reference panel ([ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.metabo.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz GIANT.metabo.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz]). This panel saves a lot of time, since it focuses on the well-imputable fine-mapping regions.
== Minimac Imputation ==
== Minimac Imputation ==
