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Minimac: 1000 Genomes Imputation Cookbook

4 bytes removed, 18:54, 27 August 2012
X Chromosome Imputation
(reference haplotypes can be found [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz here])
=== 1. Split the X chromosome pedigree file by sex ===
# For females: follow the same protocol as for autosomes
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