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Minimac: 1000 Genomes Imputation Cookbook

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X Chromosome Imputation
== X Chromosome Imputation ==
minimac (version 89.1522.12 or newer) supports the imputation of genotypes on the X chromosome
(reference haplotypes can be found [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz here])
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