1,120
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Output Text of All Test Statistics
The filename is out/test.single.b.score.epacts.gz and the contents will look like
The filename is out/test.single.b.score.epacts.gz and the contents will look like
$ zcat out/test.single.b.score.epacts.gz | head
$ zcat out/test.single.b.score.epacts.gz | head
#CHROM BEGIN END MARKER_ID NS AC CALLRATE MAF PVALUE SCORE
#CHROM BEGIN END MARKER_ID NS AC CALLRATE MAF PVALUE SCORE N.CASE N.CTRL AF.CASE AF.CTRL
20 68303 68303 20:68303_A/G_Upstream:DEFB125 266 1 1 0.0018797 NA NA NA NA NA NA
20 68319 68319 20:68319_C/A_Upstream:DEFB125 266 1.4467e-36 1 0 NA NA NA NA NA NA
20 68396 68396 20:68396_C/T_Nonsynonymous:DEFB125 266 1 1 0.0018797 NA NA NA NA NA NA
20 76635 76635 20:76635_A/T_Intron:DEFB125 266 1.534e-37 1 0 NA NA NA NA NA NA
20 76689 76689 20:76689_T/C_Synonymous:DEFB125 266 0 1 0 NA NA NA NA NA NA
20 76690 76690 20:76690_T/C_Nonsynonymous:DEFB125 266 1 1 0.0018797 NA NA NA NA NA NA
20 76700 76700 20:76700_G/A_Nonsynonymous:DEFB125 266 0 1 0 NA NA NA NA NA NA
20 76726 76726 20:76726_C/G_Nonsynonymous:DEFB125 266 0 1 0 NA NA NA NA NA NA
20 76771 76771 20:76771_C/T_Nonsynonymous:DEFB125 266 3 1 0.0056391 0.68484 0.40587 145 121 0.013793 0.0082645
==== Output Text of Top Associations ====
==== Output Text of Top Associations ====
