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Jump to navigationJump to searchMinimac: 1000 Genomes Imputation Cookbook (view source)
Revision as of 16:19, 3 October 2012
, 16:19, 3 October 2012→Reference based chunking
chunksize=7000000
chunksize=7000000
overlap=250000
overlap=250000
vcfref="yourvcfref.vcf"
vcfref="your_vcf_ref.vcf"
gwas="yourgwasfilename"
gwas="your_gwas_filename"
out="youroutputfilename"
out="your_output_filename"
for start in `seq 0 $chunksize $chromend`
for start in `seq 0 $chunksize $chromend`
