Changes

Uncompress EPACTS package to the directory you would like to install  

Uncompress EPACTS package to the directory you would like to install  

<pre> tar xzvf epacts_v2_12.noref_binary.2012_10_01.tar.gz</pre>

<pre> tar xzvf epacts_v2_12.noref_binary.2012_10_01.tar.gz</pre>  

<br>Download the reference FASTA files by running the following commands

Download the reference FASTA files from 1000 Genomes FTP automatically by running the following commands<br>

<pre>cd epacts2.1/

<pre>cd epacts2.1/

./ref_download.sh (Or copy the FASTA and index file locally you have to ${EPACTS_DIR}/ext/ref/)

./ref_download.sh

 

(For advanced users, to save time for downloading the FASTA files (~900MB), you may copy a local copy of GRCh37 FASTA file and the index file to ${EPACTS_DIR}/ext/ref/)

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