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An example command for ''de novo'' mutation detection using a different parameter setup (higher mutation rate) is as follows:
An example command for ''de novo'' mutation detection using a different parameter setup (higher mutation rate) is as follows:
polymutt -p in.ped -d in.dat -g glfIndexFile --denovo --rate_denovo 1e-06 --out_vcf out.denovo.vcf --nthreads 4
polymutt -p in.ped -d in.dat -g glfIndexFile --denovo --rate_denovo 1.2e-06 --out_vcf out.denovo.vcf --nthreads 4
== Input files ==
== Input files ==
