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340 bytes added
, 22:19, 9 October 2012
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| | <code>--haps target.hap.gz </code> | | | <code>--haps target.hap.gz </code> |
| | Phased haplotypes where missing genotypes will be imputed. | | | Phased haplotypes where missing genotypes will be imputed. |
| + | |- |
| + | | <code>--sample target.sample </code> |
| + | | Sample list in ShapeIT format. |
| + | |- |
| + | | <code>--shape_haps target.hap.gz </code> |
| + | | ShapeIT phased haplotypes where missing genotypes will be imputed. |
| + | |- |
| + | | <code>--chr 22</code> |
| + | | Chromosome for which we will carry out imputation (needed to run ShapeIT with chr:pos identifiers - default setting). |
| |- | | |- |
| | <code>--rounds 5</code> | | | <code>--rounds 5</code> |