Changes

* Some of the features will be implemented in future versions.

* Some of the features will be implemented in future versions.

* For ''de novo'' mutations, it is usually helpful to explore various mutation rate in addition to the default one (1.5x10-8). For depth lower than 30X for example, the support of ''de novo'' mutation will be weak given the low mutation rate of the default value. Trying higher values of mutation rates may be able to pick up these sites with low depth.

* For ''de novo'' mutations, it is usually helpful to explore various mutation rate in addition to the default one (1.5x10-8). For depth lower than 30X for example, the support of ''de novo'' mutation will be weak given the low mutation rate of the default value. Trying higher values of mutation rates (e.g. 10-6 or 10-7)  may be able to pick up these sites with low depth.

== Usage ==

== Usage ==