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Prepare Your Instance
'''Prepare Your Instance'''
If you launched some other instance than the one prepared for our software, you will need to install
If you launched some other instance than the one prepared for our software, you will need to install
If you have 1000 Genome data for nine individuals, you'll need about 1500GB of space (9x450x3 plus a little extra space).
If you have 1000 Genome data for nine individuals, you'll need about 1500GB of space (9x450x3 plus a little extra space).
Making your data available for the Pipeline can be accomplished in many way.
Making your data available for the Pipeline can be accomplished in many ways.
Here is a simple straightforward organization you might want to use.
Here is a simple straightforward organization you might want to use.
* Using the AWS EC2 Console Dashboard create one EBS volume (ELASTIC BLOCK STORE -> Volumes) for the sequence data (e.g. 500GB).
* Using the Dashboard create another EBS volume for the output of the aligner step (e.g. another 500GB).
* Using the Dashboard create another EBS volume for the output of the umake step (e.g. another 500GB).
Configure these EBS volumes so they use separate devices devices g, g and h (e.g. /dev/sdf (probably /dev/xvdf),
/dev/sdg (probably /dev/xvdg) and /dev/sdh (probably /dev/xvdh)).
Launch your instance and login as explained in the AWS documentation.
