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The tasks to be completed are:
The tasks to be completed are:
* Install starcluster on a machine you use
* Install and configure starcluster on a machine you use.
* Create an AWS cluster
* Create an AWS cluster
* Install the Pipeline software on the master node
* Install the Pipeline software on the master node
* Create storage for your sequence data and make it available for the software
* Create storage for your sequence data and make it available for the software
* Run the Pipeline software
* Run the Pipeline software
Installing and configuring starcluster on your machine is described at http://star.mit.edu/cluster/.
Only the second step will be covered here, as the others are described at [http://genome.sph.umich.edu/wiki/Pipelines].
'''StarCluster Configuration Example'''
StarCluster creates a model configuration file in ~/.starcluster/config and you are instructed
to edit this and set the correct values for the variables.
Here is an example of a config file that we used (with some details changed of course).
<code>
</code>
