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, 14:45, 5 November 2012
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− | Either pipeline can be run on a single machine or on a cluster of machines.
| + | = Genomes on the Cloud (GotCloud)= |
| + | |
| + | To handle the increasing volume of next generation sequencing and genotyping data, we created and developed software pipelines called '''Genomes on the Cloud (GotCloud)''' for: |
| + | *Mapping |
| + | *Variant Calling |
| + | Key Features: |
| + | *Scalable to tens of thousands of samples |
| + | *Robust against unexpected system failure using GNU make |
| + | *Massively parallel, can run hundreds of jobs |
| + | *Easy to use - Automates series of configurable steps |
| + | *Available on Amazon Web Services (AWS) Elastic Compute Cloud (EC2) |
| + | *Run on local machines/clusters |
| + | *Available via Debian Packages |
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| + | |
| The following describes the use of this software with the Amazon Web Services (https://aws.amazon.com/), | | The following describes the use of this software with the Amazon Web Services (https://aws.amazon.com/), |
− | but you can just as easily use it on your own machine(s) by just installing it. | + | but you can just as easily use the pipelines on your own machine(s) by just installing them. |
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| + | |
| + | == AWS Specific Setup == |
| '''Preparation in AWS''' | | '''Preparation in AWS''' |
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| * Notes on sequence data preparation in [[Amazon Storage|Amazon Storage]]. | | * Notes on sequence data preparation in [[Amazon Storage|Amazon Storage]]. |
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− | '''Install the Software''' | + | '''Resources / Cost''' |
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| + | * [[AWS Rresources|AWS Resources]] |
| + | |
| + | '''Development Notes''' |
| + | |
| + | * [[Creating an AMI on EC2]] |
| + | * [[Mount S3 Volume]] |
| + | |
| + | == General Usage == |
| + | |
| + | '''Install the Software (for AWS or a local machine)''' |
| | | |
| * Installing the software as a [[Pipeline Debian Package|debian package]] | | * Installing the software as a [[Pipeline Debian Package|debian package]] |
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| * [[Alignment Pipeline]] | | * [[Alignment Pipeline]] |
| * [[Variant Calling Pipeline (UMAKE)]] | | * [[Variant Calling Pipeline (UMAKE)]] |
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− | '''Resources / Cost'''
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− | * [[AWS Rresources|AWS Resources]]
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− | '''Development Notes'''
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− | * [[Creating an AMI on EC2]]
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− | * [[Mount S3 Volume]]
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