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, 15:42, 14 November 2012
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| = Usage = | | = Usage = |
| ./bam trimBam [inFile] [outFile] [num-bases-to-trim-on-each-side] | | ./bam trimBam [inFile] [outFile] [num-bases-to-trim-on-each-side] |
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| + | Version 1.0.6 and later: |
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| Alternately, the number of bases from each side can be specified (either or both -L/-R (--left/--right) can be specified): | | Alternately, the number of bases from each side can be specified (either or both -L/-R (--left/--right) can be specified): |
| ./bam trimBam [inFile] [outFile] -L [num-bases-to-trim-from-left] -R [num-bases-to-trim-from-right] | | ./bam trimBam [inFile] [outFile] -L [num-bases-to-trim-from-left] -R [num-bases-to-trim-from-right] |
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| trimBam will modify the sequences to 'N', and the quality string to '!' | | trimBam will modify the sequences to 'N', and the quality string to '!' |
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| = Parameters = | | = Parameters = |