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BamUtil

595 bytes added, 16:07, 14 November 2012
Releases
[[Media:BamUtilLibStatGen.1.0.56.tgz|BamUtilLibStatGen.1.0.56.tgz‎]] - Released 1011/2414/2012
'''BamUtilLibStatGen.1.0.5 6 Release Notes'''* Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.56]] * Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.56]]* Updates Update to: [[BamUtil: dedup|dedup]], [[BamUtil: polishBamtrimBam|polishBam]], [[BamUtil: recab|recabtrimBam]]** Update to add compile option to compile without C++0x/C++11* See [[#Release allow trimming a different number of bases from each end of just BamUtil (does not include libStatGen)|below]] for additional details on updatesthe read
'''Older Releases'''
*[[Media:BamUtilLibStatGen.1.0.5.tgz|BamUtilLibStatGen.1.0.5.tgz‎]] - Released 10/24/2012
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.5]]
** Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.5]]
** Updates to: [[BamUtil: dedup|dedup]], [[BamUtil: polishBam|polishBam]], [[BamUtil: recab|recab]]
** Update to add compile option to compile without C++0x/C++11
** See [[#Release of just BamUtil (does not include libStatGen)|below]] for additional details on updates
*BamUtilLibStatGen.1.0.4.tgz‎ - Released skipped
*[[Media:BamUtilLibStatGen.1.0.3.tgz|BamUtilLibStatGen.1.0.3.tgz‎]] - Released 09/19/2012
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
[[Media:BamUtil.1.0.56.tgz|BamUtil.1.0.56.tgz‎]] - Released 1011/2414/2012 '''BamUtil.1.0.5 Release Notes'''* Update to [[BamUtil: dedup|dedup]]** Update logic for which pair to keep if they have the same quality* Update to [[BamUtil: polishBam|polishBam]]** Update to print the number of successful header additions* Update to [[BamUtil: recab|recab]]** Update to print the number of base skipped due to the base quality* General Updates** Update to add compile option to compile without C++0x/C++11
'''BamUtil.1.0.6 Release Notes'''
* Update to [[BamUtil: trimBam|trimBam]]
** Update to allow trimming a different number of bases from each end of the read
'''Older Releases'''
*[[Media:BamUtil.1.0.5.tgz|BamUtil.1.0.5.tgz‎]] - Released 10/24/2012
** Update to [[BamUtil: dedup|dedup]]
*** Update logic for which pair to keep if they have the same quality
** Update to [[BamUtil: polishBam|polishBam]]
*** Update to print the number of successful header additions
** Update to [[BamUtil: recab|recab]]
*** Update to print the number of base skipped due to the base quality
** General Updates
*** Update to add compile option to compile without C++0x/C++11
*BamUtil.1.0.4.tgz‎ - Released skipped
*[[Media:BamUtil.1.0.3.tgz|BamUtil.1.0.3.tgz‎]] - Released 09/19/2012

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