2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Unrelated individuals
=== Unrelated individuals ===
=== Unrelated individuals ===
* Command are the same as in above example, except each individual has to have a distinct family ID in ped file.
* Command are the same as in above example, except each individual has to have a distinct family ID in ped file.
* When you have genotypes from ped and marker information from dat file, and assuming no relatedness in the sample:
./Rare-Metal-Worker --ped yours.ped --dat yours.dat
* When you have genotypes from vcf and covariates and trait information saved in ped and dat file, assuming there is no relatedness in the sample, you should use the following:
./Rare-Metal-Worker --ped yours.ped --dat yours.dat --vcf yours.vcf.gz
== Q & A ==
== Q & A ==
