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* '''Markers in PED and DAT file must be sorted by chromosome and position.'''
* '''Markers in PED and DAT file must be sorted by chromosome and position.'''
* Covariate and trait values are saved in PED file. Covariate and trait descriptions are saved in DAT file.
==== VCF File ====
==== VCF File ====
bgzip input.vcf ## this command will produce input.vcf.gz
bgzip input.vcf ## this command will produce input.vcf.gz
tabix -pvcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi
tabix -pvcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi
=== Software Options ===
=== Software Options ===
