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, 16:21, 18 November 2012
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| --useCovariates --inverseNormal | | --useCovariates --inverseNormal |
| * If --inverseNormal is used WITHOUT --makeResiduals, then trait values are inverse normalized before any model fitting. | | * If --inverseNormal is used WITHOUT --makeResiduals, then trait values are inverse normalized before any model fitting. |
− | * --traitName is created for the situation when you have many traits saved in your PED and DAT file, but you are interested in one or a few of them. It can read a file ending with .txt with each trait of interest in a separate line, or trait names separated with "/". An example to handle one trait or multiple traits is in the following: | + | * --traitName is created for situations when you have many traits saved in your PED and DAT file, but you are interested in one or a few of them. It can read a file ending with .txt with each trait of interest in a separate line, or trait names separated with "/". An example to handle one trait or multiple traits is in the following: |
| --traitName LDL | | --traitName LDL |
| --traitName LDL/HDL/TG | | --traitName LDL/HDL/TG |
| --traitName traitsOfInterest.txt | | --traitName traitsOfInterest.txt |
| + | |
| ==== Kinship Source ==== | | ==== Kinship Source ==== |
| * --kinPed allows Rare-Metal-Worker to generate kinship matrix from pedigree, when pedigree information is available. This option is on by default. | | * --kinPed allows Rare-Metal-Worker to generate kinship matrix from pedigree, when pedigree information is available. This option is on by default. |