Changes

== Results FIle Clarifications: ==

== Results FIle Clarifications ==

=== 1. How do I code the INDEL variant names and alleles?  ===

=== 1. How do I code the INDEL variant names and alleles?  ===

ACTION IF YOU HAVE UPLOADED YOUR FILE: No action. You do not need to redo the file. We will skip these columns.  

ACTION IF YOU HAVE UPLOADED YOUR FILE: No action. You do not need to redo the file. We will skip these columns.  

=== 3. For the "Imputed" variable, what does imputed mean in the context of the data output from MACH and IMPUTE? ===

=== 3. For the "Imputed" variable, what does imputed mean in the context of the data output from MACH and IMPUTE? ===

This is a hold over from the last round of analysis where we asked for results separately from genotyped SNPs and imputed SNPs and wanted to distinguish between the two. We will use r2_hat or info measures to estimate the accuracy of the genotypes. This column will be retained for consistency with files already submitted but should be filled in with "." or "1". It will not be used in the analysis.  

This is a hold over from the last round of analysis where we asked for results separately from genotyped SNPs and imputed SNPs and wanted to distinguish between the two. We will use r2_hat or info measures to estimate the accuracy of the genotypes. This column will be retained for consistency with files already submitted but should be filled in with "." or "1". It will not be used in the analysis.  

ACTION IF YOU HAVE UPLOADED YOUR FILE: No action. You do not need to redo the file. We will skip this column.

ACTION IF YOU HAVE UPLOADED YOUR FILE: No action. You do not need to redo the file. We will skip this column.