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==1. Installation==
First, make sure GotCloud is installed on your system. Installation instructions [[GotCloud#Setup|here]].
==2. Running the Automatic Test==
This verifies that GotCloud was installed correctly.
To run the test case automatically, change your current directory to gotcloud's base directory, and type in the following command:
/bin/gen_biopipeline.pl test OUTPUT_DIR
where OUTPUT_DIR is the directory where you want to store the results.
==3. Running a Sample==
Now that you have verified that GotCloud has been installed correctly, you are ready to analyze a sample.
First, make sure GotCloud is installed on your system. Installation instructions [[GotCloud#Setup|here]].
==2. Running the Automatic Test==
This verifies that GotCloud was installed correctly.
To run the test case automatically, change your current directory to gotcloud's base directory, and type in the following command:
/bin/gen_biopipeline.pl test OUTPUT_DIR
where OUTPUT_DIR is the directory where you want to store the results.
==3. Running a Sample==
Now that you have verified that GotCloud has been installed correctly, you are ready to analyze a sample.
