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46 bytes added
, 13:21, 10 March 2010
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| Notes:<br>(1) Cleaned monomorphic sites before feeding to thunder (no need, b/c thunder 005 handles AL1/-)<br>(2) All sites are bi-allelic with one of the alleles being the reference allele (sites with more than 2 alleles including the reference allele are discarded at the beginning of thunder run: initially because of a prior dependent on the reference allele. In the current setting, where Freq1 is used for the prior, we can choose to ignore the reference allele information.) <br>a. Codes changed on 2009-11-02<br>(3) Split: | | Notes:<br>(1) Cleaned monomorphic sites before feeding to thunder (no need, b/c thunder 005 handles AL1/-)<br>(2) All sites are bi-allelic with one of the alleles being the reference allele (sites with more than 2 alleles including the reference allele are discarded at the beginning of thunder run: initially because of a prior dependent on the reference allele. In the current setting, where Freq1 is used for the prior, we can choose to ignore the reference allele information.) <br>a. Codes changed on 2009-11-02<br>(3) Split: |
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− | Total 150 jobs (50 jobs for each population) | + | chr |
| + | ===== |
| + | 1-2 |
| + | 3-4 |
| + | |
| + | 5-6 |
| + | 7-8 |
| + | |
| + | 9* |
| + | |
| + | 10-12 |
| + | 13-15 |
| + | |
| + | |
| + | Total 150 jobs (50 jobs for each population) |
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| == (11) Ligate thunder results for larger chromosomes == | | == (11) Ligate thunder results for larger chromosomes == |