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To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
[[Media:LibStatGen.1.0.6.tgz|LibStatGen.1.0.6.tgz]] - Released 11/14/2012
[[Media:LibStatGen.1.0.8.tgz|LibStatGen.1.0.8.tgz]] - Released 1/29/2013
'''LibStatGen.1.0.6 Release Notes'''
'''LibStatGen.1.0.8 Release Notes'''
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
* Contains classes for general processiong (string, reference file, parameters), bam, glf, fastq, and vcf
** Updates:
** Updates:
*** Fix a bug in the make install command
*** Added VCF file handling (merged the vcf branch to master)
*** Add support for reading Tabix files
*** Add ReusableVector class that holds vectors that will remove only the last or be reset & reused without clearing memory.
''' Older Releases'''
''' Older Releases'''
*[[Media:LibStatGen.1.0.7.tgz|LibStatGen.1.0.7.tgz]] - Released 1/29/2013
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
*** Updates:
**** Add operator== to StringIntHash
**** Cleanup compiling for files that are just headers with no .cpp
**** Update Makefile TOOLOBJ to handle fortran
**** ReferenceSequence.h fix compile problem on upgraded system
**** Add Makefile.extlib for compiling libraries that use libStatGen
*** BAM Updates:
**** Update to allow copying SamHeaderRecords and automatically update the SQ ReferenceInfo
**** Update SamFileHeader::getReferenceInfo() to return a SamReferenceInfo reference rather than ptr
**** Update SamRecord::getStringTag to return a const string pointer instead of just a string pointer
**** Update SamCoordOutput to add flushAll method
* [[Media:LibStatGen.1.0.6.tgz|LibStatGen.1.0.6.tgz]] - Released 11/14/2012
** Contains classes for general processing (string, reference file, parameters), bam, glf, and fastq
*** Updates:
**** Fix a bug in the make install command
* [[Media:LibStatGen.1.0.5.tgz|LibStatGen.1.0.5.tgz]] - Released 10/24/2012
* [[Media:LibStatGen.1.0.5.tgz|LibStatGen.1.0.5.tgz]] - Released 10/24/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processing (string, reference file, parameters), bam, glf, and fastq
*** Updates:
*** Updates:
**** Cleanup compile warnings
**** Cleanup compile warnings
**** Update to output average qualities
**** Update to output average qualities
*[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
*[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processing (string, reference file, parameters), bam, glf, and fastq
** Additions:
** Additions:
*** Add reverseComplement method to BaseUtilities.h
*** Add reverseComplement method to BaseUtilities.h
*[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012
*[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processing (string, reference file, parameters), bam, glf, and fastq
** BAM Additions:
** BAM Additions:
*** Ability to use require/exclude flags when reading
*** Ability to use require/exclude flags when reading
