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[[Media:BamUtilLibStatGen.1.0.6.tgz|BamUtilLibStatGen.1.0.6.tgz]] - Released 11/14/2012
[[Media:BamUtilLibStatGen.1.0.7.tgz|BamUtilLibStatGen.1.0.7.tgz]] - Released 1/29/2013
'''BamUtilLibStatGen.1.0.7 Release Notes'''
* Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.7]]
* Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.7]]
* Update to fix some compile issues on ubuntu 12.10
* Update use of SamRecord::getStringTag to expect the return of a const string pointer due to libStatGen v1.0.7 updates
* Update SamReferenceInfo usage due to libStatGen v1.0.7 updates
* Update to [[BamUtil: diff|diff]]
** Fix DIFF to test and properly handle running out of available records. Previously no message was printed when this happened and there was a bug for which file it freed
* Update to [[BamUtil: clipOverlap|clipOverlap]]
** Update to facilitate adding other overlap handling functions
* Update to [[BamUtil: mergeBam|mergeBam]] (formerly RGMergeBam)
** Rename RGMergeBam to MergeBam
** Update to handle files that already have an RG
'''Older Releases'''
'''Older Releases'''
*[[Media:BamUtilLibStatGen.1.0.6.tgz|BamUtilLibStatGen.1.0.6.tgz]] - Released 11/14/2012
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.6]]
** Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.6]]
** Update to [[BamUtil: trimBam|trimBam]]
*** Update to allow trimming a different number of bases from each end of the read
*[[Media:BamUtilLibStatGen.1.0.5.tgz|BamUtilLibStatGen.1.0.5.tgz]] - Released 10/24/2012
*[[Media:BamUtilLibStatGen.1.0.5.tgz|BamUtilLibStatGen.1.0.5.tgz]] - Released 10/24/2012
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.5]]
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.5]]
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
[[Media:BamUtil.1.0.6.tgz|BamUtil.1.0.6.tgz]] - Released 11/14/2012
*[[Media:BamUtil.1.0.7.tgz|BamUtil.1.0.7.tgz]] - Released 1/29/2013
'''BamUtil.1.0.7 Release Notes'''
* Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.7]] or above
* Update to fix some compile issues on ubuntu 12.10
* Update use of SamRecord::getStringTag to expect the return of a const string pointer due to libStatGen v1.0.7 updates
* Update SamReferenceInfo usage due to libStatGen v1.0.7 updates
* Update to [[BamUtil: diff|diff]]
** Fix DIFF to test and properly handle running out of available records. Previously no message was printed when this happened and there was a bug for which file it freed
* Update to [[BamUtil: clipOverlap|clipOverlap]]
** Update to facilitate adding other overlap handling functions
* Update to [[BamUtil: mergeBam|mergeBam]] (formerly RGMergeBam)
** Rename RGMergeBam to MergeBam
** Update to handle files that already have an RG
'''Older Releases'''
'''Older Releases'''
*[[Media:BamUtil.1.0.6.tgz|BamUtil.1.0.6.tgz]] - Released 11/14/2012
** Update to [[BamUtil: trimBam|trimBam]]
*** Update to allow trimming a different number of bases from each end of the read
*[[Media:BamUtil.1.0.5.tgz|BamUtil.1.0.5.tgz]] - Released 10/24/2012
*[[Media:BamUtil.1.0.5.tgz|BamUtil.1.0.5.tgz]] - Released 10/24/2012
** Update to [[BamUtil: dedup|dedup]]
** Update to [[BamUtil: dedup|dedup]]
