255
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Workflow
*Geno file: genotypes of reference individuals. (See [[#Geno file|Geno file]] to understand geno file format)
*Geno file: genotypes of reference individuals. (See [[#Geno file|Geno file]] to understand geno file format)
LASER typically output two coord files: (1) in reference individuals' coord file(Reference.coord), LASER outputs the reference coordinates in the PCA space; (2) in sequence samples' coord files(AllSamples.coord), LASER infers their ancestries by placing their ancestry coordinates onto reference samples' PCA space.
LASER typically outputs two coord files: (1) in reference individuals' coord file(Reference.coord), LASER outputs the reference coordinates in the PCA space; (2) in sequence samples' coord files(AllSamples.coord), LASER infers their ancestries by placing their ancestry coordinates onto reference samples' PCA space.
An example result of the coord file of sequence samples is shown below:
An example result of the coord file of sequence samples is shown below:
