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29 bytes added ,  12:17, 21 February 2013
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Installation instructions [[GotCloud#Setup|here]].
 
Installation instructions [[GotCloud#Setup|here]].
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==Mapping Reads==
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== STEP 2 : Run GotCloud Alignment Pipeline ==
 
The first step in processing next generation sequence data is mapping the reads to the reference genome, generating per sample BAM files.  
 
The first step in processing next generation sequence data is mapping the reads to the reference genome, generating per sample BAM files.  
  

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