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== {{anchor|sec4.3}} Auxiliary tools ==
== {{anchor|sec4.3}} Auxiliary tools ==
ABI SOLiD platform generated FASTA file (e.g. XXX.csfasta) and quality file (e.g. XXX\_QV.qual) separately. We wrote a script, \emph{solid2csfastq.py}, to convert it to color space FASTQ file(e.g. XXX.csfastq). We believe a single color space FASTQ file will simplify post processing.<br>
ABI SOLiD platform generated FASTA file (e.g. XXX.csfasta) and quality file (e.g. XXX\_QV.qual) separately. We wrote a script, ''solid2csfastq.py'', to convert it to color space FASTQ file(e.g. XXX.csfastq). We believe a single color space FASTQ file will simplify post processing.<br>
== {{anchor|sec4.4}} Choose an appropriate size for word index ==
== {{anchor|sec4.4}} Choose an appropriate size for word index ==
