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Tutorial: GotCloud (view source)

Revision as of 16:43, 24 February 2013

69 bytes removed ,  16:43, 24 February 2013
→‎STEP 2 : Run GotCloud Alignment Pipeline
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Run the mapping pipeline:
 
Run the mapping pipeline:
 
  $GCHOME/gotcloud align --conf $GCDATA/[[GBR60map.conf]] --outdir $GCOUT
 
  $GCHOME/gotcloud align --conf $GCDATA/[[GBR60map.conf]] --outdir $GCOUT
−
  −
TBD - add link explaining the contents of the .conf & .index files.
      
Upon successful completion of the mapping pipeline, you will see the following message:  
 
Upon successful completion of the mapping pipeline, you will see the following message:  
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/6503"

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