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Jump to navigationJump to search→STEP 3 : Run GotCloud Variance Calling Pipeline
Run the variant calling pipeline:
Run the variant calling pipeline:
$GCHOME/gotcloud snpcall --conf [[GBR60vc.conf]] --outdir vcResults --snpcall --numjobs 2
$GCHOME/gotcloud snpcall --conf [[GBR60vc.conf]] --outdir $GCOUT --snpcall --numjobs 2
TBD - add link explaining the contents of the .conf & .index files.
TBD - add link explaining the contents of the .conf & .index files.
