Changes

From Genome Analysis Wiki
Jump to navigationJump to search

Tutorial: GotCloud (view source)

Revision as of 01:05, 25 February 2013

10 bytes removed ,  01:05, 25 February 2013
→‎STEP 4 : Run GotCloud Genotype Refinement Pipeline
Line 128: Line 128:  
The next step is to perform genotype refinement using linkage disequilibrium information using [http://faculty.washington.edu/browning/beagle/beagle.html Beagle] & [[ThunderVCF]].
 
The next step is to perform genotype refinement using linkage disequilibrium information using [http://faculty.washington.edu/browning/beagle/beagle.html Beagle] & [[ThunderVCF]].
   −
  $GCHOME/gotcloud ldrefine --conf [[GBR60vc.conf]] --outdir $GCOUT --snpcall --numjobs 2
+
  $GCHOME/gotcloud ldrefine --conf [[GBR60vc.conf]] --outdir $GCOUT --numjobs 2
    
== STEP 5 : Run GotCloud Association Analysis Pipeline ==
 
== STEP 5 : Run GotCloud Association Analysis Pipeline ==
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/6516"

Navigation menu