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Jump to navigationJump to search→STEP 4 : Run GotCloud Genotype Refinement Pipeline
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Commands finished in xxx secs with no errors reported
The output from the beagle step of the genotype refinement pipeline is found in:
ls $GCOUT/beagle/chr20/chr20.filtered.PASS.beagled.vcf.gz $GCOUT/beagle/chr20/chr20.filtered.PASS.beagled.vcf.gz.tbi
The output from the thunderVcf (final step) of the genotype refinement pipeline is found in:
ls $GCOUT/thunder/chr20/GBR/chr20.filtered.PASS.beagled.GBR.thunder.vcf.gz $GCOUT/thunder/chr20/GBR/chr20.filtered.PASS.beagled.GBR.thunder.vcf.gz.tbi
== STEP 5 : Run GotCloud Association Analysis Pipeline ==
== STEP 5 : Run GotCloud Association Analysis Pipeline ==
