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Jump to navigationJump to search→STEP 5 : Run GotCloud Association Analysis Pipeline
== STEP 5 : Run GotCloud Association Analysis Pipeline ==
== STEP 5 : Run GotCloud Association Analysis Pipeline ==
/net/fantasia/home/hmkang/bin/epacts/bin/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped --out EPACTS_TEST --test q.linear --run -1 --top 1 --chr 20
/net/fantasia/home/hmkang/bin/epacts/bin/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped --out EPACTS_TEST --test q.linear --run 1 --top 1 --chr 20
= Tutorial Inputs / Modifying the Tutorial Inputs to Run Your Own Data =
= Tutorial Inputs / Modifying the Tutorial Inputs to Run Your Own Data =
