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RAREMETAL Documentation

1 byte removed, 17:20, 25 February 2013
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Example Usage
First, use the following command to write the VCF file:
./raremetal --studyName your.studyName.file --writeVcf --prefix yourPrefix
Second, annotate the VCF file using your favorite annotation program. (Annotated VCF file has to follow the format described here: [[httpshttp://statgengenome.sph.umich.edu/wiki/RaremetalRare-Metal#Grouping_from_an_Annotated_VCF_File annotated VCF format]])
Third, use the following command to do meta analysis:
./raremetal --studyName your.studyName.file --annotatedVcf your.annotated.vcf --annotation nonsyn/splicing/stop --burden --MB --SKAT --VT --maf 0.01 --prefix yourPrefix
== Q & A ==
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