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2 bytes added ,  11:15, 28 February 2013
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Upon successful completion of the alignment pipeline (about 1-2 minutes), you will see the following message:  
 
Upon successful completion of the alignment pipeline (about 1-2 minutes), you will see the following message:  
  Commands finished in nn secs with no errors reported
+
  Processing finished in nn secs with no errors reported
    
The final BAM files produced by the alignment pipeline are:
 
The final BAM files produced by the alignment pipeline are:

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