Changes

We summarize software requirments as following:

We summarize software requirments as following:

*  Binary reference genome in nucleotide space (see [[sec4.1|Karma-colorspace#sec4.1]]})  

*  Binary reference genome in nucleotide space (see [[Input file requirement|#Input file requirement]]})  

*  Binary reference genome and word index in color space (see \ref{sec:2})  

*  Binary reference genome and word index in color space (see \ref{sec:2})  

*  Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification)  

*  Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification)  

= <br> Additional Information<br> =

= <br> Additional Information<br> =

== {{anchor|sec4.1}}Input file requirement<br> ==

== Input file requirement ==

&nbsp; KARMA require input files in valid color space FASTQ format.<br> &nbsp; We require the length of reads(including leading primer) should equal to the length of its quality string.<br> &nbsp;<br> &nbsp; A valid example of color space FASTQ file:<br>

&nbsp; KARMA require input files in valid color space FASTQ format.<br> &nbsp; We require the length of reads(including leading primer) should equal to the length of its quality string.<br> &nbsp;<br> &nbsp; A valid example of color space FASTQ file:<br>