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, 16:36, 4 March 2013
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| == STEP 6 : Run GotCloud Association Analysis Pipeline == | | == STEP 6 : Run GotCloud Association Analysis Pipeline == |
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− | TBD/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped --out $GCOUT/epacts \\ | + | TBD/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped \\ |
− | --test q.linear --run 1 --top 1 --chr 20
| + | --out $GCOUT/epacts --test q.linear --run 1 --top 1 --chr 20 |
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| Upon successful run, you will see files starting with $GCOUT/epacts | | Upon successful run, you will see files starting with $GCOUT/epacts |