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, 16:39, 4 March 2013
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− | To speed variant calling, each chromosome is broken up into smaller regions which are processed separately. While initially split by sample, the per sample data gets merged and is processed together for each region. These regions are later merged to result in a single Variant Call File (VCF) per chromosome. | + | To speed variant calling, each chromosome is broken up into smaller regions which are processed separately. While initially split by sample, the per sample data gets merged and is processed together for each region. These regions are later merged to result in a single Variant Call File (VCF) per chromosome. For the tutorial all of the data falls within a single region. |
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| Run the variant calling pipeline: | | Run the variant calling pipeline: |