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Tutorial: GotCloud (view source)

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== STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS) ==

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~~TBD~~/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped \\

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If you need to install EPACTS, please refer to the documentation at [[EPACTS#Installation_Details]]

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$EPACTS/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped \\

--out $GCOUT/epacts --test q.linear --run 1 --top 1 --chr 20

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