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*Alignment
*Alignment
*Variant Calling
*Variant Calling
It Connects sequence analysis tools in an automated pipeline
Key Features:
Key Features:
*Scalable to tens of thousands of samples
*Scalable to tens of thousands of samples
*Available via Debian Packages
*Available via Debian Packages
Takes pipelines we have been using for our sequence data processing and makes them publicly available & usable.
The following describes the use of this software with the Amazon Web Services (https://aws.amazon.com/),
The following describes the use of this software with the Amazon Web Services (https://aws.amazon.com/),
Latest Documentation at [[Tutorial: GotCloud]]
Latest Documentation at [[Tutorial: GotCloud]]
== Join GotCloud mailing list ==
== Join GotCloud mailing list ==
You can also email Mary Kate Wing (mktrost@umich.edu).
You can also email Mary Kate Wing (mktrost@umich.edu).
== Detailed Background Information ==
*Why use GotCloud?
** Many tools required to create high quality
[[File:GotCloudDiagram.png]]
== Setup ==
== Setup ==
