From Genome Analysis Wiki
== Related Programs ==
Local ancestry inference with high density genotype array data can be done with existing software [http://www.stats.ox.ac.uk/~myers/software.html/ HAPMIX], [http://lamp.icsi.berkeley.edu/lamp/ LAMP], [http://genepath.med.harvard.edu/~reich/Software.htm/ ANCESTRYMAP]
. (Warning: These programs are not user friendly and are very difficult to get it running)
Whole genome ancestry inference with ultra low coverage sequence data can be analyzed with [[LASER]].