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Local ancestry inference with high density genotype array data can be done with existing software [http://www.stats.ox.ac.uk/~myers/software.html/ HAPMIX], [http://lamp.icsi.berkeley.edu/lamp/ LAMP], [http://genepath.med.harvard.edu/~reich/Software.htm/ ANCESTRYMAP] (Warning: These programs are not user friendly and are very difficult to run.).
 
Local ancestry inference with high density genotype array data can be done with existing software [http://www.stats.ox.ac.uk/~myers/software.html/ HAPMIX], [http://lamp.icsi.berkeley.edu/lamp/ LAMP], [http://genepath.med.harvard.edu/~reich/Software.htm/ ANCESTRYMAP] (Warning: These programs are not user friendly and are very difficult to run.).
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Whole genome ancestry inference with ultra low coverage sequence data can be analyzed with [[LASER]].
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Whole genome ancestry inference with ultra low coverage sequence data can be analyzed with [http://genome.sph.umich.edu/wiki/LASER/ LASER].
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