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We summarize software requirments as following:
We summarize software requirments as following:
* Binary reference genome in nucleotide space (see [[Input file requirement|#sec4.1]]})
* Binary reference genome in nucleotide space (see [[#sec4.1|Input file requirement]]})
* Binary reference genome and word index in color space (see \ref{sec:2})
* Binary reference genome and word index in color space (see \ref{sec:2})
* Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification)
* Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification)
= <br> Additional Information<br> =
= <br> Additional Information<br> =
== <a name="sec4.1"></a>Input file requirement ==
==Input file requirement==
{{sec4.1}}
KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br>
KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br>
