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, 16:18, 25 March 2013
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| The tutorial will then used previously aligned/mapped reads for the full 60 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites. | | The tutorial will then used previously aligned/mapped reads for the full 60 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites. |
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− | The example dataset we'll be using is available at: ftp://share.sph.umich.edu/gotcloud/gotcloudExample.tar | + | The example dataset we'll be using is available at: ftp://share.sph.umich.edu/gotcloud/gotcloudExample.tgz |
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| # Create & Change directory to where you want to install the Tutorail data | | # Create & Change directory to where you want to install the Tutorail data |
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| mkdir -p $GCDATA; cd $GCDATA | | mkdir -p $GCDATA; cd $GCDATA |
− | wget ftp://share.sph.umich.edu/gotcloud/gotcloudExample.tar.gz # Download | + | wget ftp://share.sph.umich.edu/gotcloud/gotcloudExample.tgz # Download |
− | tar xvf gotcloudExample.tar.gz --strip 1 # Extract | + | tar xvf gotcloudExample.tgz --strip 1 # Extract |
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| == STEP 2 : Run GotCloud Alignment Pipeline == | | == STEP 2 : Run GotCloud Alignment Pipeline == |