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== Lastest ChangeLog ==
== Lastest ChangeLog ==
* March 25th, 2013 : EPACTS v3.2.3 release
** Relaxed the checking of low-rank matrix in SKAT tests (to avoid unncessary skipping of genes)
* March 13th, 2013 : EPACTS v3.2.2 release
* March 13th, 2013 : EPACTS v3.2.2 release
* Fixed an error which occasionally report mismatches in the number of samples
** Fixed an error which occasionally report mismatches in the number of samples
* March 9th, 2013 : EPACTS v3.2.1 release
* March 9th, 2013 : EPACTS v3.2.1 release
**Fixed errors in loading the dynamic library
**Fixed errors in loading the dynamic library
If you want to use EPACTS in an Ubuntu platform, following the step below
If you want to use EPACTS in an Ubuntu platform, following the step below
*Download EPACTS source distribution at http://www.sph.umich.edu/csg/kang/epacts/download/EPACTS-3.2.2.tar.gz (100MB)
*Download EPACTS source distribution at http://www.sph.umich.edu/csg/kang/epacts/download/EPACTS-3.2.3.tar.gz (100MB)
*Uncompress EPACTS package, and install the package using the following set of commands
*Uncompress EPACTS package, and install the package using the following set of commands
tar xzvf EPACTS-3.2.2.tar.gz
tar xzvf EPACTS-3.2.3.tar.gz
cd EPACTS-3.2.2
cd EPACTS-3.2.3
./configure --prefix=/path/to/install
./configure --prefix=/path/to/install
make
make
20 1616892 1616892 20:1616892_A/G_Synonymous:SIRPG 266 144 1 0.27068 0.0051239 2.7991 145 121 0.63449 0.42975
20 1616892 1616892 20:1616892_A/G_Synonymous:SIRPG 266 144 1 0.27068 0.0051239 2.7991 145 121 0.63449 0.42975
20 25038372 25038372 20:25038372_G/A_Intron:ACSS1 266 103.3 1 0.19418 0.005748 2.7618 145 121 0.47201 0.28813
20 25038372 25038372 20:25038372_G/A_Intron:ACSS1 266 103.3 1 0.19418 0.005748 2.7618 145 121 0.47201 0.28813
The key columns represents:
* '''NS''' : Number of phenotyped samples with non-missing genotypes
* '''AC''' : Total Non-reference Allele Count
* '''CALLRATE''' : Fraction of non-missing genotypes.
* '''MAF''' : Minor allele frequencies
* '''PVALUE''' : P-value of single variant test
* '''AF.CASE''' : Non-reference allele frequencies for cases
* '''AF.CTRL''' : Non-reference allele frequencies for controls
==== Q-Q plot of test statistics (stratified by MAF) ====
==== Q-Q plot of test statistics (stratified by MAF) ====
== Full ChangeLog ==
== Full ChangeLog ==
* March 25th, 2013 : EPACTS v3.2.3 release
** Relaxed the checking of low-rank matrix in SKAT tests (to avoid unncessary skipping of genes)
* March 13th, 2013 : EPACTS v3.2.2 release
** Fixed an error which occasionally report mismatches in the number of samples
* March 9th, 2013 : EPACTS v3.2.1 release
* March 9th, 2013 : EPACTS v3.2.1 release
**Fixed errors in loading the dynamic library
**Fixed errors in loading the dynamic library
