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Tutorial: GotCloud (view source)

Revision as of 17:00, 17 April 2013

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== STEP 5 : Run GotCloud Genotype Refinement Pipeline ==  
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== STEP 4 : Run GotCloud Genotype Refinement Pipeline ==  
 
The next step is to perform genotype refinement using linkage disequilibrium information using [http://faculty.washington.edu/browning/beagle/beagle.html Beagle] & [[ThunderVCF]].  
 
The next step is to perform genotype refinement using linkage disequilibrium information using [http://faculty.washington.edu/browning/beagle/beagle.html Beagle] & [[ThunderVCF]].  
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== STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS) ==  
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== STEP 5 : Run GotCloud Association Analysis Pipeline (EPACTS) ==  
    
We will assume that the EPACTS are installed in the following directory
 
We will assume that the EPACTS are installed in the following directory
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/7124"

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