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=== Labeling multiple SNPs ===
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You can specify a file controlling the labels for either the reference SNP, or any other arbitrary SNP within the region. For example:
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[[File:New lz denote markers.png|700px]]
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Use the --denote-markers-file <file> argument to do this:
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<syntaxhighlight lang="bash">
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locuszoom ... --denote-markers-file <your file>
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</syntaxhighlight>
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The file looks like:
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{|
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|-
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! scope="col" | snp
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! scope="col" | string
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! scope="col" | color
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|-
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| rs231362 || GWAS || blue
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|-
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| rs163184 || Conditional || purple
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|-
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|}
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It must be tab-delimited and the columns must have a header and be named as such.
      
=== GWAS catalog variants ===
 
=== GWAS catalog variants ===
Line 635: Line 607:     
[[File:New lz finemap summary.png|400px]]
 
[[File:New lz finemap summary.png|400px]]
 +
 +
 +
=== Labeling multiple SNPs ===
 +
 +
You can specify a file controlling the labels for either the reference SNP, or any other arbitrary SNP within the region. For example:
 +
 +
[[File:New lz denote markers.png|700px]]
 +
 +
Use the --denote-markers-file <file> argument to do this:
 +
 +
<syntaxhighlight lang="bash">
 +
locuszoom ... --denote-markers-file <your file>
 +
</syntaxhighlight>
 +
 +
The file looks like:
 +
 +
{|
 +
|-
 +
! scope="col" | snp
 +
! scope="col" | string
 +
! scope="col" | color
 +
|-
 +
| rs231362 || GWAS || blue
 +
|-
 +
| rs163184 || Conditional || purple
 +
|-
 +
|}
 +
 +
It must be tab-delimited and the columns must have a header and be named as such.
    
== Output  ==
 
== Output  ==
239

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