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, 14:05, 9 May 2013
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− | === Labeling multiple SNPs ===
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− | You can specify a file controlling the labels for either the reference SNP, or any other arbitrary SNP within the region. For example:
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− | [[File:New lz denote markers.png|700px]]
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− | Use the --denote-markers-file <file> argument to do this:
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− | <syntaxhighlight lang="bash">
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− | locuszoom ... --denote-markers-file <your file>
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− | </syntaxhighlight>
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− | The file looks like:
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− | {|
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− | |-
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− | ! scope="col" | snp
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− | ! scope="col" | string
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− | ! scope="col" | color
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− | |-
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− | | rs231362 || GWAS || blue
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− | |-
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− | | rs163184 || Conditional || purple
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− | |-
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− | |}
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− | It must be tab-delimited and the columns must have a header and be named as such.
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| === GWAS catalog variants === | | === GWAS catalog variants === |
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| [[File:New lz finemap summary.png|400px]] | | [[File:New lz finemap summary.png|400px]] |
| + | |
| + | |
| + | === Labeling multiple SNPs === |
| + | |
| + | You can specify a file controlling the labels for either the reference SNP, or any other arbitrary SNP within the region. For example: |
| + | |
| + | [[File:New lz denote markers.png|700px]] |
| + | |
| + | Use the --denote-markers-file <file> argument to do this: |
| + | |
| + | <syntaxhighlight lang="bash"> |
| + | locuszoom ... --denote-markers-file <your file> |
| + | </syntaxhighlight> |
| + | |
| + | The file looks like: |
| + | |
| + | {| |
| + | |- |
| + | ! scope="col" | snp |
| + | ! scope="col" | string |
| + | ! scope="col" | color |
| + | |- |
| + | | rs231362 || GWAS || blue |
| + | |- |
| + | | rs163184 || Conditional || purple |
| + | |- |
| + | |} |
| + | |
| + | It must be tab-delimited and the columns must have a header and be named as such. |
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| == Output == | | == Output == |