Changes

   --minDepth      ''threshold''      Positions where the read depth falls below this threshold will be excluded.

   --minDepth      ''threshold''      Positions where the read depth falls below this threshold will be excluded.

   --maxDepth      ''threshold''      Positions where the read depth exceeds this threshold will be excluded.

   --maxDepth      ''threshold''      Positions where the read depth exceeds this threshold will be excluded.

   --reference                       Positions called as homozygous reference will be included in the output.

   --reference                   Positions called as homozygous reference will be included in the output.

 

== Model for Variant Calling ==

== Model for Variant Calling ==