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| PLINK_PATH
| PLINK_PATH
| Path to the PLINK binary. Defaults to "plink", which searches for PLINK on your path. If it is not on your path, specify the full path here.
| Path to the PLINK binary. Defaults to "plink", which searches for PLINK on your path. If it is not on your path, specify the full path here.
|-
| RSCRIPT_PATH
| Path to the Rscript binary. Defaults to "Rscript", which searches for Rscript on your path. If it is not on your path, specify the full path here.
|-
|-
| SQLITE_DB
| SQLITE_DB
| LD_DB
| LD_DB
| Contains a "tree" which maps a tuple of (genotype source, genotype population, genome build) to genotype files.
| Contains a "tree" which maps a tuple of (genotype source, genotype population, genome build) to genotype files.
|-
| GWAS_CATS
| Contains a "tree" which maps genome build and the name of a GWAS catalog to the actual file containing the GWAS hits.
|}
|}
