Changes

This option takes the place of having to supply per-region pre-calculated LD (--ld) or having to specify --pop and --source for calculating LD from genotype files supplied by LZ.  

This option takes the place of having to supply per-region pre-calculated LD (--ld) or having to specify --pop and --source for calculating LD from genotype files supplied by LZ.  

<span style="color:#FF6600">'''Warning: '''</span> The VCF file must also have a tabix index located in the same directory. For the above example, the tabix index "my_genotypes.vcf.gz.tbi" must exist.

<span style="color:#FF6600">'''Warning: '''</span> The VCF file must also have a [http://samtools.sourceforge.net/tabix.shtml tabix] index located in the same directory. For the above example, the tabix index "my_genotypes.vcf.gz.tbi" must exist.