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, 07:02, 15 November 2009
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| = Build Binary Reference Genome and Word Index<br> = | | = Build Binary Reference Genome and Word Index<br> = |
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− | First, we need to build binary reference genome (option: --createReference)<br> <ref>To let KARMA map nucleotide space reads, you need to use ``--createIndex''to create the word index file.</ref>''<br> | + | First, we need to build binary reference genome (option: --createReference)<br> |
| + | <ref>To let KARMA map nucleotide space reads, you need to use ``--createIndex''to create the word index file.</ref><br> |
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| in nucleotide space. Assume NCBI36.fa is a FASTA file contains sequences of all chromosomes.<br> The command to invoke is:<br> | | in nucleotide space. Assume NCBI36.fa is a FASTA file contains sequences of all chromosomes.<br> The command to invoke is:<br> |
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− | !!1111111111111111111111111111111111</pre> | + | !!1111111111111111111111111111111111 |
| + | </pre> |
| == Minimum read length requirement == | | == Minimum read length requirement == |
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