Changes

GotCloud: Versions (view source)

139 bytes added , 15:24, 3 July 2013

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'''Aligner'''

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* DEPRECATED:

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* DEPRECATED configuration settings:

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** BWA_MAX_MEM is now SORT_MAX_MEM

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** 'BWA_MAX_MEM' is now 'SORT_MAX_MEM'

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** VERIFY_BAM_ID_OPTIONS is now

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** 'VERIFY_BAM_ID_OPTIONS' is now 'verifyBamID_USER_PARAMS'

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**

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* ALN_TMP now defaults to $(TMP_DIR)/alignment.aln rather than $(TMP_DIR)/alignment.bwa

* Upgrade to latest QPLOT

** GC Content file has been renamed to have the extension: .winsize100.gc

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